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public:alban_gaignard [2014/03/31 10:43]
gaignard [PhD in Computer Science - CNRS Engineer]
public:alban_gaignard [2015/04/03 12:57] (current)
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 ====== Alban Gaignard ​ ====== ====== Alban Gaignard ​ ======
 ==== PhD in Computer Science - CNRS Engineer ==== ==== PhD in Computer Science - CNRS Engineer ====
-{{:​public:​gaignard:​albangaignard-cv2014.pdf|CV (french)}} +  * {{:​public:​gaignard:​albangaignard-cv2014.pdf|CV (french)}} 
-[[http://​fr.linkedin.com/​in/​albangaignard/​|LinkedIn profile]] - [[http://​scholar.google.fr/​citations?​user=4ruSswgAAAAJ|Google scholar profile]] ​+  ​* ​[[http://​fr.linkedin.com/​in/​albangaignard/​|LinkedIn profile]] 
 +  * [[http://​hal.archives-ouvertes.fr/​Public/​afficheRequetePubli.php?​auteur_exp=A.,​%20Gaignard%20;​%20Alban,​%20Gaignard&​CB_auteur=oui&​CB_titre=oui&​CB_article=oui&​CB_Resume_court=oui&​CB_typdoc=oui&​langue=Anglais&​tri_exp=annee_publi&​tri_exp2=typdoc&​tri_exp3=date_publi&​ordre_aff=TA&​Fen=Aff&​css=../​css/​VisuRubriqueEncadre.css|HAL,​ open access publication list]]  
 +  * [[http://​scholar.google.fr/​citations?​user=4ruSswgAAAAJ|Google scholar profile]] ​ 
 ===== Contact ===== ===== Contact =====
  
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 I defended my **PhD thesis** in Computer Science in 2013, at University of Nice-Sophia Antipolis. This thesis addressed the **distributed knowledge production and sharing** ​ in the context of **collaborative e-Science** platforms. I defended my **PhD thesis** in Computer Science in 2013, at University of Nice-Sophia Antipolis. This thesis addressed the **distributed knowledge production and sharing** ​ in the context of **collaborative e-Science** platforms.
 ===== Research interests ===== ===== Research interests =====
- 
  
 == Knowledge Engineering == == Knowledge Engineering ==
- 
  
     * Semantic Web, Linked Data     * Semantic Web, Linked Data
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 == Computational E-Sciences == == Computational E-Sciences ==
- 
  
     * Large-scale infrastructures (grids, clouds)     * Large-scale infrastructures (grids, clouds)
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-== Model Driven Engineering ​== +===== Research projects ===== 
- +    * CNRS MASTODONS CrEDIBLE 
- +    * ANR Ginseng 
-    * Aspect Oriented {Modeling ; Software Development} +    * ANR VIP 
-    * Variability in software engineering+    * ANR NeuroLOG ​
  
 +===== PC member =====
 +    * CCGrid-Life'​15
 +    * CCGrid-Health'​14
 +    * HealthGrid'​12
 +    * CrEDIBLE'​14
 +    * CrEDIBLE'​13
 +    * CrEDIBLE'​12
 ===== PhD Thesis ===== ===== PhD Thesis =====
 Supervised by Johan Montagnat, obtained in march 2013.  Supervised by Johan Montagnat, obtained in march 2013. 
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 == Academic journals == == Academic journals ==
  
 +    * [2014] __A. Gaignard__, J. Montagnat, B. Gibaud, G. Forestier, T. Glatard. **[[http://​hal.archives-ouvertes.fr/​docs/​01/​02/​75/​96/​PDF/​JWS-D-13-00125R4.pdf | Domain-specific summarisation of Life-Science e-experiments from provenance traces]]**, Web Semantics: Science, Services and Agents on the World Wide Web. 
 +    * [2014] B. Gibaud, G. Forestier,​H. Benoit-Cattin,​ F. Cervenansky,​ P. Clarysse, D. Friboulet, __A. Gaignard__, P. Hugonnard, C. Lartizien, H. Liebgott, J. Montagnat, J. Tabary, T. Glatard. **[[http://​www.hal.inserm.fr/​docs/​01/​06/​23/​71/​PDF/​ontovip-for-hal.pdf | OntoVIP: an ontology for the annotation of object models used for medical image simulation]]**,​ Journal of Biomedical Informatics.
     * [2013] T. Glatard, C. Lartizien, B. Gibaud, R. Ferreira da Silva, G. Forestier, F. Cervenansky,​ M. Alessandrini,​ H. Benoit-Cattin,​ O. Bernard, S. Camarasu-Pop,​ N. Cerezo, P. Clarysse, __A. Gaignard__, P. Hugonnard, H. Liebgott, S. Marache, A. Marion, J. Montagnat, J. Tabary and D. Friboulet. **[[http://​hal.archives-ouvertes.fr/​index.php?​halsid=u30g98d20u1npr3rkno6goci74&​view_this_doc=inserm-00762497&​version=1|A Virtual Imaging Platform for multi-modality medical image simulation]]**,​ IEEE Transactions on Medical Imaging (TMI), 32 (1), pages 110-118, January 2013.     * [2013] T. Glatard, C. Lartizien, B. Gibaud, R. Ferreira da Silva, G. Forestier, F. Cervenansky,​ M. Alessandrini,​ H. Benoit-Cattin,​ O. Bernard, S. Camarasu-Pop,​ N. Cerezo, P. Clarysse, __A. Gaignard__, P. Hugonnard, H. Liebgott, S. Marache, A. Marion, J. Montagnat, J. Tabary and D. Friboulet. **[[http://​hal.archives-ouvertes.fr/​index.php?​halsid=u30g98d20u1npr3rkno6goci74&​view_this_doc=inserm-00762497&​version=1|A Virtual Imaging Platform for multi-modality medical image simulation]]**,​ IEEE Transactions on Medical Imaging (TMI), 32 (1), pages 110-118, January 2013.
     * [2011] M. Acher, P. Collet, __A. Gaignard__, P. Lahire, J. Montagnat, R. B. France. **[[http://​hal.archives-ouvertes.fr/​index.php?​halsid=njs56o622d3bvpgdae0ek1erb4&​view_this_doc=hal-00733556&​version=1|Composing Multiple Variability Artifacts to Assemble Coherent Workflows]]**,​ SQJo’2011 (Software Quality Journal, special issue in Quality Engineering for Software Product Lines).     * [2011] M. Acher, P. Collet, __A. Gaignard__, P. Lahire, J. Montagnat, R. B. France. **[[http://​hal.archives-ouvertes.fr/​index.php?​halsid=njs56o622d3bvpgdae0ek1erb4&​view_this_doc=hal-00733556&​version=1|Composing Multiple Variability Artifacts to Assemble Coherent Workflows]]**,​ SQJo’2011 (Software Quality Journal, special issue in Quality Engineering for Software Product Lines).
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 == Workshops, national conferences & other communications == == Workshops, national conferences & other communications ==
  
-    * [2014] O. Seye, C. Faron Zucker, O. Corby, __A. Gaignard__. **Publication,​ partage et réutilisation de règles sur le Web de Données**, national conference IC'14 (Ingénierie des Connaissances),​ Clermont-Ferrand. +    * [2014] O. Seye, C. Faron Zucker, O. Corby, __A. Gaignard__. **[[http://​hal.archives-ouvertes.fr/​hal-01015281|Publication,​ partage et réutilisation de règles sur le Web de Données]]**, national conference IC'14 (Ingénierie des Connaissances),​ Clermont-Ferrand. 
-    * [2014] S. Cipière, G. Ereteo, __A. Gaignard__, N. Boujelben, S. Gaspard, V. Breton, F. Cervenansky,​ D. Hill, T. Glatard, D. Manset, J. Montagnat, J. Revillard, L. Maigne. **Global Initiative for Sentinel e-Health Network on Grid (GINSENG), Medical data integration and semantic developments for epidemiology**,​ workshop CCGrid-Health'​14,​ Chicago.+    * [2014] S. Cipière, G. Ereteo, __A. Gaignard__, N. Boujelben, S. Gaspard, V. Breton, F. Cervenansky,​ D. Hill, T. Glatard, D. Manset, J. Montagnat, J. Revillard, L. Maigne. **[[https://​hal.archives-ouvertes.fr/​hal-01048737|Global Initiative for Sentinel e-Health Network on Grid (GINSENG), Medical data integration and semantic developments for epidemiology]]**, workshop CCGrid-Health'​14,​ Chicago.
     * [2012] __A. Gaignard__, J. Montagnat, C. Faron Zucker, O. Corby. **[[http://​hal.archives-ouvertes.fr/​hal-00746765|Semantic Federation of Distributed Neurodata]]**,​ MICCAI-DCITAI workshop, Data- and Compute-Intensive Clinical and Translational Imaging Applications,​ Nice.     * [2012] __A. Gaignard__, J. Montagnat, C. Faron Zucker, O. Corby. **[[http://​hal.archives-ouvertes.fr/​hal-00746765|Semantic Federation of Distributed Neurodata]]**,​ MICCAI-DCITAI workshop, Data- and Compute-Intensive Clinical and Translational Imaging Applications,​ Nice.
-    * [2012] __A. Gaignard__, J. Montagnat, C. Faron Zucker, O. Corby. **Fédération multi-sources en neurosciences : intégration de données relationnelles et sémantiques.**  National workshop "​Knowledge engineering for semantic interoperability in e-Health",​ IC'12 (Ingénierie des Connaissances),​ Paris.+    * [2012] __A. Gaignard__, J. Montagnat, C. Faron Zucker, O. Corby. **[[http://​hal.archives-ouvertes.fr/​hal-01018722|Fédération multi-sources en neurosciences : intégration de données relationnelles et sémantiques]]** ​National workshop "​Knowledge engineering for semantic interoperability in e-Health",​ IC'12 (Ingénierie des Connaissances),​ Paris.
     * [2012] H. Benoit-Cattin,​ P. Clarysse, D. Friboulet, __A. Gaignard__, B. Gibaud, T. Glatard, H. Liebgott, D. Manset, J. Tabary. **A multi-modality Virtual Imaging Platform for the evaluation of image analysis algorithms** ​ ECR’2012 conference, EIBIR IMAGINE Workshop, Vienna.     * [2012] H. Benoit-Cattin,​ P. Clarysse, D. Friboulet, __A. Gaignard__, B. Gibaud, T. Glatard, H. Liebgott, D. Manset, J. Tabary. **A multi-modality Virtual Imaging Platform for the evaluation of image analysis algorithms** ​ ECR’2012 conference, EIBIR IMAGINE Workshop, Vienna.
     * [2011] F. Michel, B. Batrancourt,​ M. Dojat, __A. Gaignard__, B. Gibaud, J. Montagnat, M. Pélégrini-Issac,​ X. Pennec, J. Rojas-Balderrama. **NeuroLOG : a fede- rated system to share distributed and heterogeneous neuroimaging resources**. ECR’2011 conference, EIBIR IMAGINE Workshop, Vienna.     * [2011] F. Michel, B. Batrancourt,​ M. Dojat, __A. Gaignard__, B. Gibaud, J. Montagnat, M. Pélégrini-Issac,​ X. Pennec, J. Rojas-Balderrama. **NeuroLOG : a fede- rated system to share distributed and heterogeneous neuroimaging resources**. ECR’2011 conference, EIBIR IMAGINE Workshop, Vienna.
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-    * **KGRAM-DQP** ​ : Extension to the Corese/​KGRAM ([[http://​wimmics.inria.fr/​corese|http://​wimmics.inria.fr/​corese]] ) semantic web framework (SPARQL 1.1) dedicated to querying and reasoning on distributed knowledge graphs. Several query rewriting and dynamic optimizations for efficient distributed query processing. This software is under active development ([[https://​modalis.i3s.unice.fr/​_media/​members/​gaignard/​kgram-dqp-demo.mp4|Video demonstration]])+    * **KGRAM-DQP** ​ : Extension to the Corese/​KGRAM ([[http://​wimmics.inria.fr/​corese|http://​wimmics.inria.fr/​corese]] ) semantic web framework (SPARQL 1.1) dedicated to [[public:​kgram_dqp_alban_gaignard|querying and reasoning on distributed knowledge graphs]]. Several query rewriting and dynamic optimizations for efficient distributed query processing. This software is under active development ([[https://​modalis.i3s.unice.fr/​_media/​members/​gaignard/​kgram-dqp-demo.mp4|Video demonstration]])
     * **NeuSemStore** ​ : Semantic repositories dedicated to biomedical data management ([[http://​nyx.unice.fr/​projects/​neusemstore|http://​nyx.unice.fr/​projects/​neusemstore]] ). Plugins for the MOTEUR scientific workflow engine ([[http://​modalis.i3s.unice.fr/​moteur2|http://​modalis.i3s.unice.fr/​moteur2]] ) including a semantic registry of composable services, and a provenance tracker allowing for inferring domain-scpecific e-science experiment summaries. This software is under active development.     * **NeuSemStore** ​ : Semantic repositories dedicated to biomedical data management ([[http://​nyx.unice.fr/​projects/​neusemstore|http://​nyx.unice.fr/​projects/​neusemstore]] ). Plugins for the MOTEUR scientific workflow engine ([[http://​modalis.i3s.unice.fr/​moteur2|http://​modalis.i3s.unice.fr/​moteur2]] ) including a semantic registry of composable services, and a provenance tracker allowing for inferring domain-scpecific e-science experiment summaries. This software is under active development.
     * **NeuroLOG middleware** ​ : Web service based middleware to setup secured multi-centric studies for neurosciences,​ including a semantic based federation layer to address neuroimaging data distribution and heterogeneity (2010). ([[http://​neurolog.polytech.unice.fr|http://​neurolog.polytech.unice.fr]] )     * **NeuroLOG middleware** ​ : Web service based middleware to setup secured multi-centric studies for neurosciences,​ including a semantic based federation layer to address neuroimaging data distribution and heterogeneity (2010). ([[http://​neurolog.polytech.unice.fr|http://​neurolog.polytech.unice.fr]] )
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 ===== Complementary formation ===== ===== Complementary formation =====
  
 +    * 2014 : Parallel and distributed data analytics [[http://​www-hpc.cea.fr/​SummerSchools2014-CS.htm]]
     * 2009 : International Summer School of Grid Computing, ISSGC'​09,​ Sophia-Antipolis,​ France     * 2009 : International Summer School of Grid Computing, ISSGC'​09,​ Sophia-Antipolis,​ France
     * 2009 : Biomed Grid School'​09,​ Varena, Italy     * 2009 : Biomed Grid School'​09,​ Varena, Italy
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